PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.1325s0040.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family ERF
Protein Properties Length: 240aa    MW: 26374.4 Da    PI: 10.4981
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.1325s0040.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.52.1e-204089356
                     AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                            ++GVr ++ +gr++AeIrdp   gk++r++lg+f+taeeAa+a++aa+++++g+
  SapurV1A.1325s0040.1.p 40 FRGVRKRP-WGRYAAEIRDP---GKKTRVWLGTFDTAEEAARAYDAAAREFRGA 89
                            8*******.**********8...557*************************985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.8E-143988IPR001471AP2/ERF domain
PROSITE profilePS5103224.0923996IPR001471AP2/ERF domain
SMARTSM003803.6E-3639102IPR001471AP2/ERF domain
CDDcd000187.78E-193997No hitNo description
SuperFamilySSF541712.94E-224096IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.105.4E-324096IPR001471AP2/ERF domain
PRINTSPR003673.7E-114051IPR001471AP2/ERF domain
PRINTSPR003673.7E-116278IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MALSYQTSHL IIKSPHHATM APRERPDNHH LNSPRSEIRF RGVRKRPWGR YAAEIRDPGK  60
KTRVWLGTFD TAEEAARAYD AAAREFRGAK AKTNFPAIGE LNPNPTRSPS QSSTVESSSP  120
PTPRAASPPP LDLTLNISHR NPDRQQFPNG VRFPGGAWFP FPAVARPVFF FDAFAHAKNN  180
TPSSSSIVNN INMCRFDRTV MVNGGPSDSD SSSVVDFDRH HDSKGLSLDL NLAPPPEVA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-194096360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A4e-194096663ATERF1
3gcc_A4e-194096663ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011029525.13e-98PREDICTED: ethylene-responsive transcription factor 4-like
SwissprotO803404e-44ERF78_ARATH; Ethylene-responsive transcription factor 4
TrEMBLR4TXF94e-98R4TXF9_POPTO; ERF4
STRINGPOPTR_0001s40770.16e-92(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33034189
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15210.13e-25ethylene responsive element binding factor 4